Papers & Talks

Papers
Google Scholar Profile

†: (co-)1st author  ·  *: (co-)corresponding author

Preprints & In Preparation

  1. Hyukpyo Hong, Seewoo Lee
    Necessary and sufficient conditions of the existence of finite dimensional subspace invariant under polynomial ODEs In Prep
  2. Ella Buelling, Wolfram Liebermeister, Hyukpyo Hong
    Connection between structural sensitivity analysis and metabolic control analysis In Prep
  3. Hyukpyo Hong, Matthew Colbrook, Qin Li, Hanbaek Lyu
    Efficient algorithm for finding a finite-dimensional Koopman representation In Prep
  4. Hyukpyo Hong, Diego Rojas La Luz, Gheorghe Craciun
    Ubiquitous asymptotic robustness in biochemical systems arXiv

Published & Accepted

  1. Dongju Lim†, Kyeong Tae Ko†, Hyukpyo Hong, Hyojung Lee, Boseung Choi, Won Chang, Sunhwa Choi, Jae Kyoung Kim
    A history-dependent approach for accurate initial condition estimation in epidemic models Journal
    PLoS Computational Biology, 2025
  2. Hyukpyo Hong†, Seokhwan Moon†, Yuji Hirono†, Jae Kyoung Kim
    Topological criterion for robust perfect adaptation of reaction fluxes in biological networks Journal
    iScience, 2025
  3. Hyukpyo Hong†, Eunjin Eom†, Hyojung Lee, Sunhwa Choi, Boseung Choi, Jae Kyoung Kim*
    Overcoming bias in estimating epidemiological parameters with realistic history-dependent disease spread dynamics Journal
    Nature Communications, 2024
  4. Hyeontae Jo†, Hyukpyo Hong†, Hyung Ju Hwang, Won Chang, Jae Kyoung Kim*
    Density physics-informed neural networks reveal sources of cell heterogeneity in signal transduction Journal
    Patterns, 2023
  5. Hyukpyo Hong†, Mark Jayson Cortez, Yu-Yu Cheng, Hang Joon Kim, Boseung Choi, Krešimir Josić, Jae Kyoung Kim*
    Inferring delays in partially observed gene regulation processes Journal
    Bioinformatics, 2023
  6. Hyukpyo Hong, Bryan Hernandez, Jinsu Kim, Jae Kyoung Kim*
    Computational translation framework identifies biochemical reaction networks with special topologies and their long-term dynamics Journal
    SIAM Journal on Applied Mathematics, 2023
  7. Hyukpyo Hong†, Ji Yun Noh†, Hyojung Lee, Sunhwa Choi, Boseung Choi, Jae Kyoung Kim, Eui-Cheol Shin
    Modeling incorporating the severity-reducing long-term immunity: higher viral transmission paradoxically reduces severe COVID-19 during endemic transition Journal
    Immune Network, 2022
  8. Dae Wook Kim†, Hyukpyo Hong†, Jae Kyoung Kim*
    Systematic inference identifies a major source of heterogeneity in cell signaling dynamics: The rate-limiting step number Journal
    Science Advances, 2022
  9. Yun Min Song†, Hyukpyo Hong†, Jae Kyoung Kim*
    Universally valid reduction of multiscale stochastic biochemical systems with simple non-elementary propensities Journal
    PLoS Computational Biology, 2021
  10. Mark Jayson Cortez†, Hyukpyo Hong, Boseung Choi, Jae Kyoung Kim, Krešimir Josić*
    Hierarchical Bayesian models for inference in biochemical reactions with delays Journal
    Bioinformatics, 2021
  11. Jaehyoung Hong†, Su Jung Choi†, Se Ho Park, Hyukpyo Hong, Victoria Booth, Eun Yeon Joo, Jae Kyoung Kim
    Personalized sleep-wake patterns aligned with circadian rhythm relieve daytime sleepiness Journal
    iScience, 2021
  12. Hyukpyo Hong†, Jinsu Kim†, M Ali Al-Radhawi, Eduardo Sontag, Jae Kyoung Kim*
    Derivation of stationary distributions of biochemical reaction networks via structure transformation Journal
    Communications Biology, 2021
Book Chapters
  1. Hyukpyo Hong, Boseung Choi, Jae Kyoung Kim*
    Beyond the Michaelis-Menten: Bayesian inference for enzyme kinetic analysis Link
    Computational Methods for Estimating the Kinetics Parameters of Biological Systems, vol 2385. Humana, New York, NY.
Invited Talks

SMB: Society for Mathematical Biology · KSMB: Korean SMB · SIAM: Society for Industrial and Applied Mathematics · KSIAM: Korean SIAM · KMS: Korean Mathematical Society

Contributed Talks & Posters